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General Software Lists§

Our clusters have a wide range of software installed, available by using the modules system.

The module files are organised by name, version, variant (where applicable) and, if relevant, the compiler version used to build the software. If no compiler version is given, either no compiler was required, or only the base system compiler (/usr/bin/gcc) and libraries were used.

When we install applications, we try to install them on all of our clusters, but sometimes licence restrictions prevent it. If something seems to be missing, it may be because we are not able to provide it. Please contact us for more information if this is hindering your work.

The lists below were last updated at 15:31:16 (+0100) on 06 Jun 2020, and are generated from the software installed on the Myriad cluster.

Bundles§

Some applications or tools depend on a lot of other modules, or have some awkward requirements. For these, we sometimes make a "bundle" module in this section, that loads all the dependencies.

For Python and R in particular, we also have recommended bundles that load the module for a recent version of Python or R, along with a collection of packages for it that have been requested by users, and the modules those packages require.

The lists of Python and R packages installed for those bundles are on separate pages:

We'll sometimes include /new and /old versions of these bundles, if we've recently made a version switch or are intending to make one soon. We send out emails to the user lists about version changes, so if you use these bundles, you should look out for those.

Module Description
beta-modules This module adds the beta module space to your environment.
bioperl/recommended Loads all the modules needed to use BioPerl.
blic-modules Adds Cancer Biology supported modules to your environment.
cancerit/20190218 adds UCL set of cancerit packages to your environment variables
cancerit/recommended adds UCL recommended set of cancerit packages to your environment variables
chemistry-modules Adds Chemistry Department supported modules to your environment.
climate-tools/recommended Adds set of default applications to the environment for climate science users.
deep_earth Sets up VASP, Gnuplot etc for Earth Sciences
default-modules-aristotle Adds default Aristotle modules to your environment.
default-modules/2015 Adds default Legion modules to your environment.
default-modules/2017 Adds default Legion modules to your environment.
default-modules/2018 Adds default Legion modules to your environment.
economics-modules Adds Economics Department modules to your environment.
farr-modules Adds FARR supported modules to your environment.
farr/recommended Adds set of default applications to the environment for FARR users.
gmt/new Adds set of default modules to the environment for GMT users.
gmt/old Adds set of default modules to the environment for gmt users.
gmt/recommended Adds set of default modules to the environment for gmt users.
naglib/mark27-intel-2019 adds the NAG Library Mark 27 and required modules to your environment.
octave/recommended Octave is an open source competitor to Matlab.
personal-modules Adds personal modules to your environment.
physics-modules Adds Pysics Department supported modules to your environment.
pypy3/3.5-compat Adds UCL recommended set of Pypy3 python packages to your environment variables. To see what is included, check https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/pypy-shared.list and https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/pypy-3.list
python2/recommended Adds UCL recommended set of python packages to your environment variables. To see what is included, check https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-shared.list and https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-2.list
python3/3.4 Adds UCL recommended set of python packages to your environment variables. To see what is included, check https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-shared.list and https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-3.list
python3/3.5 Adds UCL recommended set of python packages to your environment variables. To see what is included, check https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-shared.list and https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-3.list
python3/3.6 Adds UCL recommended set of python packages to your environment variables. To see what is included, check https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-shared.list and https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-3.list
python3/3.7 Adds UCL recommended set of python packages to your environment variables. To see what is included, check https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-shared.list and https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-3.list
python3/3.8 Adds UCL recommended set of python packages to your environment variables. To see what is included, check https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-shared.list and https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-3.list
python3/recommended Adds UCL recommended set of python packages to your environment variables. To see what is included, check https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-shared.list and https://github.com/UCL-RITS/rcps-buildscripts/blob/master/lists/python-3.list
r/new adds UCL recommended set of R packages to your environment variables
r/old adds UCL recommended set of R packages to your environment variables
r/r-3.6.0_bc-3.9 adds UCL recommended set of R packages to your environment variables
r/recommended adds UCL recommended set of R packages to your environment variables
rsd-modules Adds Research Software Development supported modules to your environment.
thermo-modules Adds modules for Molecular Thermodynamics to your environment.
torch-deps Loads the dependencies for Torch and makes a quick-install alias.
workaround-modules This module adds the workarounds module space to your environment.

Applications§

Module Description
abaqus/2017 Adds Abaqus 2017 to your environment.
adf/2014.10 Adds ADF 2014.10 to your environment.
afni/20151030 Adds AFNI to your environment.
afni/20181011 Adds AFNI to your environment.
amber/14/mpi/intel-2015-update2 Adds AMBER 14 to your environment
amber/14/openmp/intel-2015-update2 Adds AMBER 14 to your environment
amber/14/serial/intel-2015-update2 Adds AMBER 14 to your environment
amber/16/mpi/gnu-4.9.2 Adds AMBER 16 to your environment
amber/16/mpi/intel-2015-update2 Adds AMBER 16 to your environment
amber/16/openmp/gnu-4.9.2 Adds AMBER 16 to your environment
amber/16/openmp/intel-2015-update2 Adds AMBER 16 to your environment
amber/16/serial/gnu-4.9.2 Adds AMBER 16 to your environment
amber/16/serial/intel-2015-update2 Adds AMBER 16 to your environment
ansys/17.2 Adds Ansys CFX/Fluent etc to your environment
ansys/18.0 Adds Ansys CFX/Fluent etc to your environment
ansys/19.1 Adds Ansys CFX/Fluent, EM etc to your environment
ansys/2019.r3 Adds Ansys CFX/Fluent, EM etc to your environment
ants/2.1.0 Adds ANTs 2.1.0 (Advanced Normalization Tools) to your environment. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit.
approxwf/gnu-4.9.2 Adds ApproxWF to your environment.
arrayfire/3.5.0/gnu-4.9.2 Adds ArrayFire 3.5.0 to your environment.
asp/2.6.2 Adds NASA Ames Stereo Pipeline (ASP) 6.2.2 to your environment.
autodock/4.2.6 Adds AutoDock and AutoGrid 4.2.6 to your environment. AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.
bamtools/2.4.0/gnu-4.9.2 Adds BamTools 2.4.0 to your environment. BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
bcftools/1.2/gnu-4.9.2 Adds BCFtools 1.2 to your environment. Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
bcftools/1.3.1/gnu-4.9.2 Adds BCFtools 1.3.1 to your environment. Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
bcftools/2.1/gnu-4.9.2 Adds BCFtools 1.2 to your environment. Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
bcl2fastq/1.8.4 Adds bcl2fastq 1.8.4 to your environment.
bcl2fastq2/2.19.1 Adds bcl2fastq2 2.19.1 to your environment.
beast/2.3.0 Adds BEAST 2.3.0 with addons to your PATH.
bedtools/2.25.0 Adds bedtools 2.25.0 to your environment. The bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks.
bgen/1.1.4 Adds BGen 1.1.4 to your environment.
blast+/2.2.30/intel-2015-update2 This module adds the BLAST+ 2.2.30 package to your environment.
blast/2.2.26 Adds Blast 2.2.26 to your environment.
blender/2.79 Adds Blender Version 2.79 to your environment.
boltztrap/1.2.5/intel-2018 Adds boltztrap 1.2.5 to your environment.
bowtie/1.1.2 Adds Bowtie 1.1.2 to your environment.
bowtie2/2.2.5 Adds Bowtie2 2.2.5 to your environment.
bwa/0.6.2/gnu-4.9.2 Adds BWA 0.7.12 to your environment. BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome.
bwa/0.7.12/gnu-4.9.2 Adds BWA 0.7.12 to your environment. BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome.
caffe/1.0/cpu Adds Caffe 1.0 for CPU to your environment.
caffe/1.0/cudnn Adds Caffe 1.0 for CUDA+CudNN to your environment.
caffe/1.0/gpu Adds Caffe 1.0 for CUDA to your environment.
cancerit/20190218-python-2.7.12/gnu-4.9.2 Adds CancerIT program versions as of 20190218 to your environment. The CancerIT Suite is a collection of linked bioinformatics tools.
cancerit/gnu-4.9.2 Adds the cancer it suite to your environment.
castep/17.2/intel-2017 Adds castep 17.2 to your environment. CASTEP is a program that uses density functional theory to calculate the properties of materials from first principles.
castep/17.21/intel-2017 Adds castep 17.21 to your environment. CASTEP is a program that uses density functional theory to calculate the properties of materials from first principles.
castep/19.1.1/intel-2019 CASTEP is a program that uses density functional theory to calculate the properties of materials from first principles.
cctools/5.4.1/gnu-4.9.2 Adds cctools 5.4.1 to your environment.
cctools/7.0.11/gnu-4.9.2 Adds cctools 7.0.11 to your environment.
cesm/1.0.6/intel-2015-update2 Adds CESM 1.0.6 to your environment.
cesm/1.2.2/intel-2015-update2 Adds CESM 1.2.2 to your environment.
cfd-ace/2014.1 Adds CFD-ACE+ to your execution path. Only on Grace and Myriad.
cfd-ace/2018.0 Adds CFD-ACE+ to your execution path. Only on Grace and Myriad.
chemshell/3.7.1/mpi/gulp4.5 This is a modulefile for ChemShell 3.7.1, MPI+GULP version. Can be used to run other packages if you load a module for those.
chemshell/3.7.1/standalone This is a modulefile for ChemShell 3.7.1, standalone serial version. Can be used to run GULP and other packages if you load a module for those.
clustal-omega/1.2.1 Adds Clustal Omega 1.2.1 to your environment.
clustal-w/2.1 Adds Clustal W 2.1 to your environment.
cmg/2017.101 Adds CMG Reservoir Simulation Software Version 2017.101 to your environment.
cmg/2018.101 Adds CMG Reservoir Simulation Software Version 2018.101 to your environment.
cmg/2019.101 Adds CMG Reservoir Simulation Software Version 2019.101 to your environment.
collectl/4.0.2 [collectl/4.0.2] collectl is a tool for tracking and monitoring various node usage statistics.
compucell3d/3.7.4 Adds CompuCell3D to your environment
comsol/52 Adds the COMSOL 52 binaries to your environment. COMSOL Multiphysics® is a general-purpose software platform, based on advanced numerical methods, for modeling and simulating physics-based problems. Module must be loaded once from a login node prior to running jobs.
comsol/52a Adds the COMSOL 52a binaries to your environment. COMSOL Multiphysics® is a general-purpose software platform, based on advanced numerical methods, for modeling and simulating physics-based problems. Module must be loaded once from a login node prior to running jobs.
comsol/53a Adds COMSOL Multiphysics Version 53a to your environment.
cosi-corr/oct14 Adds COSI-Corr Version Oct14 for use with ENVI 5.5.2/5.5.3 to your environment.
covid-19-spatial-sim/0.8.0/intel-2020 SpatialSim COVID-19 pandemic modelling tool from Imperial College.
covid-19-spatial-sim/0.9.0/gnu-4.9.2 SpatialSim COVID-19 pandemic modelling tool from Imperial College.
covid-19-spatial-sim/0.13.0/gnu-4.9.2 SpatialSim COVID-19 pandemic modelling tool from Imperial College.
covid-19-spatial-sim/0.14.0/gnu-4.9.2 SpatialSim COVID-19 pandemic modelling tool from Imperial College.
covid-19-spatial-sim/0.14.0/intel-2020 SpatialSim COVID-19 pandemic modelling tool from Imperial College.
cp2k/4.1/ompi/gnu-4.9.2 Adds CP2K to your environment.
cp2k/5.1/ompi-plumed/gnu-4.9.2 Adds CP2K to your environment.
cp2k/5.1/ompi/gnu-4.9.2 Adds CP2K to your environment.
cp2k/6.1/ompi/gnu-4.9.2 Adds CP2K to your environment.
cp2k/7.1/ompi/gnu-4.9.2 Adds CP2K to your environment.
cpmd/4.1/intel-2017 Adds CPMD 4.1 to your environment.
crystal14/v1.0.3 Adds Crystal14 v1.0.3 to your environment.
crystal14/v1.0.4 Adds Crystal14 v1.0.4 to your environment.
crystal14/v1.0.4_2017 Adds Crystal14 v1.0.4 to your environment.
crystal17/v1.0.1 Adds Crystal17 v1.0.1 to your environment.
crystal17/v1.0.2/intel-2017 The CRYSTAL program computes the electronic structure of periodic systems within Hartree Fock, density functional or various hybrid approximations.
cuba/4.2/gnu-4.9.2 adds Cuba Numerical Integration Package Version 4.2 to your environment.
cufflinks/2.2.1 Adds Cufflinks 2.2.1 to your environment.
curl/7.47.1/gnu-4.9.2 Adds curl 7.47.1 to your environment.
datamash/1.4 This is a module with no description string.
deeptools/3.0.2 Adds deeptools to your environment.
delly/0.7.8-bindist Delly is an integrated structural variant (SV) prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data.
dftbplus/17.1/intel-2017 DFTB+ is a quantum mechanical simulation software package, based on the Density Functional Tight Binding (DFTB) method.
dftbplus/18.2/intel-2018 DFTB+ is a software package for carrying out fast quantum mechanical atomistic calculations based on the Density Functional Tight Binding method.
dftbplus/19.1/intel-2018 DFTB+ is a software package for carrying out fast quantum mechanical atomistic calculations based on the Density Functional Tight Binding method.
dftbplus/dev/d07f92e/intel-2017 DFTB+ is a quantum mechanical simulation software package, based on the Density Functional Tight Binding (DFTB) method.
dl_poly/4.07/intel-2015-update2 Adds DL_POLY 4.07 to your environment
dl_poly/4.08-plumed-2.3.1/intel-2017 Adds dl_poly 4.08 to your environment. DL_POLY is a general purpose classical molecular dynamics (MD) simulation software developed at Daresbury Laboratory. This version has been linked against the PLUMED metadynamics library.
dl_poly/4.08/intel-2015-update2 Adds DL_POLY 4.08 to your environment.
dl_poly/4.09/intel-2018 Adds DL_POLY 4.09 to your environment.
dl_poly/classic/1.9/intel-2015-update2 Adds DL_POLY Classic 1.9 to your environment
dock/6.9-impi/intel-2018 The DOCK suite of programs is designed to find favorable orientations of a ligand in a receptor. This is the Intel MPI build, intended for high-performance parallel runs.
dock/6.9-reference/gnu-4.9.2 The DOCK suite of programs is designed to find favorable orientations of a ligand in a receptor. This is a reference build intended to be close to the version of the software the developers test with: a serial build using the GNU compilers.
dos2unix/7.3 Adds dos2unix 7.3 to your environment. Text format converters dos2unix, unix2dos, mac2unix, unix2mac.
dssp/3.0.0/gnu-4.9.2 Adds dssp 3.0.0 to your environment. DSSP calculates DSSP entries from Protein Databank (PDB) entries.
dymola/2020.1-1 Dymola is a commercial modeling and simulation environment based on the open Modelica modeling language.
ea-utils/822 Adds ea-utils to your environment.
easylausanne/55c7bf0 Adds Easy Lausanne to your environment.
eigensoft/6.1.1/gnu-4.9.2 Adds EIGENSOFT 6.1.1 to your environment. Population genetics methods and EIGENSTRAT stratification correction method.
elk/4.0.15/intel-2018 Adds Elk 4.0.15 to your environment. Binary is elk.
elk/4.0.15/intel-2018+wa Adds Elk 4.0.15 to your environment. Binary is elk.
elk/4.3.6/intel-2017 Adds Elk 4.3.6 to your environment. Binary is elk.
elk/4.3.6/intel-2017+wa Adds Elk 4.3.6 to your environment. Binary is elk.
elk/5.2.14/intel-2018 Elk is an all-electron full-potential linearised augmented-planewave (FP-LAPW) code.
energyplus/8.9.0-bindist EnergyPlus™ is a whole building energy simulation program that engineers, architects, and researchers use to model both energy consumption—for heating, cooling, ventilation, lighting and plug and process loads—and water use in buildings.
energyplus/9.1.0-bindist EnergyPlus™ is a whole building energy simulation program that engineers, architects, and researchers use to model both energy consumption—for heating, cooling, ventilation, lighting and plug and process loads—and water use in buildings.
envi/5.5.2 Adds ENVI 5.5.2 with IDL 8.7.2 to your environment.
envi/5.5.3 Adds ENVI 5.5.3 with IDL 8.7.3 to your environment.
epacts/3.3.0/gnu-4.9.2 Adds EPACTS 3.3.0 to your environment.
examl/8dcf2cc/gnu-4.9.2 Adds ExaML to your environment.
exonerate/2.2.0 Adds Exonerate to your environment.
fasta/36.3.8d/gnu-4.9.2 Adds the cancer it suite to your environment.
fastqc/0.11.5 Adds FastQC 0.11.5 to your environment. A quality control application for high throughput sequence data.
fastqc/0.11.8 Adds FastQC 0.11.8 to your environment. A quality control application for high throughput sequence data.
ffmpeg/4.1/gnu-4.9.2 FFmpeg is a framework for encoding, decoding, muxing, demuxing, encoding, transcoding, streaming, filtering, and playing many types of audio and video media.
fgbio/0.5.1 Adds fgbio to your environment. fgbio is a command line toolkit for working with genomic and particularly next generation sequencing data.
fgbio/0.6.1 Adds fgbio to your environment. fgbio is a command line toolkit for working with genomic and particularly next generation sequencing data.
figtree/1.4.2 Adds Figtree 1.4.2.
foldx/4 Adds FoldX Suite 4 to your environment.
freesurfer/5.3.0 Adds FreeSurfer 5.3.0 to your environment. FreeSurfer is a set of automated tools for reconstruction of the brain's cortical surface from structural MRI data, and overlay of functional MRI data onto the reconstructed surface.
freesurfer/6.0.0 Adds FreeSurfer 6.0.0 to your environment. FreeSurfer is a set of automated tools for reconstruction of the brain's cortical surface from structural MRI data, and overlay of functional MRI data onto the reconstructed surface.
fsl/5.0.9 Adds FSL 5.0.9 (FMRIB Software Library) to your environment. FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
fsl/5.0.10 Adds FSL 5.0.10 (FMRIB Software Library) to your environment. FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
fsl/6.0.0 Adds FSL 6.0.0 (FMRIB Software Library) to your environment. FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
fsl/6.0.0_cuda Adds FSL 6.0.0 CUDA (FMRIB Software Library) to your environment. FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
gamess/5Dec2014_R1/intel-2015-update2 Adds GAMESS 5Dec2014_R1 to your environment, built for Intel MPI. Uses ~/Scratch/gamess for USERSCR. You can override by exporting GAMESS_USERSCR as another path.
gatk/3.4.46 Adds GATK 3.4.46 to your environment. The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyze high-throughput sequencing data. Website: https://www.broadinstitute.org/gatk/index.php
gatk/3.8.0 Adds GATK 3.8.0 to your environment. The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyze high-throughput sequencing data. Website: https://www.broadinstitute.org/gatk/index.php
gatk/4.0.3.0 Adds GATK 4.0.3.0 to your environment. The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyze high-throughput sequencing data. Website: https://www.broadinstitute.org/gatk/index.php
gatk/4.0.8.0 Adds GATK 4.0.8.0 to your environment. The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyze high-throughput sequencing data. Website: https://www.broadinstitute.org/gatk/index.php
gaussian/g09-c01_linda/pgi-2013.9 Adds Gaussian 09 Revision C01 and GaussView 5 to your environment.
gaussian/g09-d01/pgi-2015.4 Adds Gaussian G09-D01 to your environment and also includes Linda and Gaussview 5.
gaussian/g09-d01/pgi-2015.7 Adds Gaussian G09-D01 to your environment and also includes Linda and Gaussview 5
gaussian/g16-a03/pgi-2016.5 Adds Gaussian G16-A03 to your environment and also includes Linda and Gaussview 6
gdal/2.0.0 Adds GDAL 2.0.0 to your environment variables. Works with Python 2.
gdal/2.1.1 adds GDAL 2.1.1 with PROJ.4 4.9.1 to your environment variables. Works with Python 2.
gdal/2.1.4 adds GDAL 2.1.4 with PROJ.4 6.1.0 to your environment variables. Works with Python 2.
gdal/3.0.4/gnu-4.9.2 adds GDAL 3.0.4 with PROJ.4 6.1.0 to your environment variables. Works with Python 2.
gephi/0.9.1 Adds Gephi Version 0.9.1 to your environment.
ghostscript/9.16/gnu-4.9.2 Adds Ghostscript 9.16 to your environment.
ghostscript/9.19/gnu-4.9.2 Adds Ghostscript 9.19 to your environment.
gmsh/2.12.0-bindist Adds gmsh 2.12.0 to your environment. Gmsh is a free 3D finite element grid generator with a build-in CAD engine and post-processor.
gmt/5.1.2 adds GMT 5.1.2 to your environment variables
gmt/5.3.1 adds GMT 5.3.1 to your environment variables
gmt/5.4.5 adds GMT 5.4.5 to your environment variables
gnuplot/5.0.1 Adds gnuplot 5.0.1 to your environment. Gnuplot is a portable command-line driven graphing utility.
grace/5.1.25 Adds Grace 5.1.25 to your environment. Grace is a 2D plotting tool.
graphicsmagick/1.3.21 adds GraphicsMagick 1.3.21 to your environment variables
graphviz/2.38.0/gnu-4.9.2 This module adds the Graphviz 2.38.0 package to your environment. Graphviz is open source graph visualization software.
graphviz/2.40.1/gnu-4.9.2 This module adds the Graphviz 2.40.1 package to your environment. Graphviz is open source graph visualization software.
groff/1.22.3/gnu-4.9.2 Adds GNU groff Version 1.22.3 to your environment.
gromacs/5.0.4/intel-2015-update2 Adds GROMACS 5.0.4 to your environment, built using MKL
gromacs/5.0.4/plumed/intel-2015-update2 Adds GROMACS 5.0.4 with Plumed 2.1.2 to your environment. Note: Plumed will always run in double precision even if GROMACS is single-precision, so only use that combination if you need it and are aware of the effects.
gromacs/5.1.1/intel-2015-update2 Adds GROMACS 5.1.1 to your environment, built using MKL
gromacs/5.1.1/plumed/intel-2015-update2 Adds GROMACS 5.1.1 with Plumed 2.2 to your environment. Note: Plumed will always run in double precision even if GROMACS is single-precision, so only use that combination if you need it and are aware of the effects.
gromacs/5.1.3/plumed/intel-2015-update2 GROMACS 5.1.3 molecular dynamics package, built with Intel 2015u2 compilers, PLUMED 2.2.3 patches (including libmatheval), and OpenBLAS 0.2.14.
gromacs/2016.3/intel-2017-update1 Adds GROMACS 2016.3 to your environment, built using MKL
gromacs/2016.3/plumed/intel-2017-update1 GROMACS 2016.3 molecular dynamics package, built with Intel 2017u1 compilers, PLUMED 2.3.1 patches (including libmatheval), and OpenBLAS 0.2.14.
gromacs/2016.4/plumed/intel-2017 GROMACS 2016.4 molecular dynamics package, built with Intel 2017u4 compilers, PLUMED 2.4.1 patches (including libmatheval) with hrex, and OpenBLAS 0.2.14.
gromacs/2018.2/intel-2018 Adds gromacs 2018 to your environment. GROMACS is a package for performing molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
gromacs/2018.3/intel-2018 Adds gromacs 2018 to your environment. GROMACS is a package for performing molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
gromacs/2018.3/plumed/intel-2018 GROMACS 2018.3 molecular dynamics package, built with Intel 2018u3 compilers, PLUMED 2.4.3 patches (including libmatheval).
gromacs/2018/intel-2017 Adds gromacs 2018 to your environment. GROMACS is a package for performing molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
gromacs/2019.3/cuda-10 Adds gromacs 2019 to your environment. GROMACS is a package for performing molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
gromacs/2019.3/intel-2018 Adds gromacs 2019 to your environment. GROMACS is a package for performing molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
gromacs/2019.3/plumed/intel-2018 GROMACS 2019.3 molecular dynamics package, built with Intel 2018u3 compilers, PLUMED 2.5.2 patches (including libmatheval).
gulp/4.5/intel-2018 Adds GULP 4.5 to your environment. Built with FoX and without plumed. GULP is a materials simulation code.
gulp/5.1.1/intel-2018 Adds GULP 5.1.1 to your environment. Built with FoX and without plumed. GULP is a materials simulation code.
gurobi/7.5.1 Adds Gurobi 7.5.1 to your environment.
gurobi/8.1.1 Adds Gurobi 8.1.1 to your environment.
h5utils/1.12.1 Adds h5utils 1.12.1 to your environment. h5utils is a set of utilities for visualization and conversion of scientific data in HDF5 format.
hammock/1.0.5 Loads the dependencies for Hammock 1.0.5 to your environment and makes a quick-install alias, do-hammock-install. Run as java -Xmx2g -jar $HAMMOCKPATH/Hammock.jar mode param1 param2 -d outputpath. Will use Scratch for temporary files.
hhsuite/3.0-beta.1/gnu-4.9.2 Adds hhsuite 3.0-beta.1 to your environment.
hmmer/3.1b2 Adds HMMER 3.1b2 to your environment.
hoomd-blue/2.4.2 Adds HOOMD-blue to your environment.
hopspack/2.0.2/gnu-4.9.2 Adds HOPSPACK 2.0.2 to your environment
hopspack/2.0.2/intel-2017 Adds HOPSPACK 2.0.2 to your environment
icommands/4.1.7 [icommands/4.1.7] The iRODS iCommands are the command-line clients to an iRODS system.
idl/8.4.1 Adds IDL 8.4.1 to your environment.
idl/8.7.3 Adds IDL 8.7.3 to your environment.
illustrate/20190807 adds Illustrate to your environment variables
impute2/2.3.2 adds Impute2 V2.3.2 to your environment.
inetutils/1.9.4 GNU inetutils is a package of utilities for performing a range of network tasks including FTP and telnet clients.
intltool/0.51.0 Adds intltool 0.51.0 to your environment. intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
iva/0.11.6 Adds IVA 0.11.6 to your environment.
iva/1.0.0 Adds IVA 1.0.0 to your environment.
jags/3.4.0/gnu.4.9.2-atlas Adds JAGS 3.4.0 to your environment.
jags/3.4.0/gnu.4.9.2-openblas Adds JAGS 3.4.0 to your environment.
jags/4.2.0/gnu.4.9.2-openblas Adds JAGS 4.2.0 to your environment.
jq/1.5/gnu-4.9.2 adds jq for GCC 4.9.2 to your environment.
kallisto/v0.42.5 Adds Kallisto v0.42.5 to your environment.
keras/2.2.4 Adds Keras to your environment.
kmc/2.1.1/gnu-4.9.2 Adds KMC 2.1.1 to your environment. KMC is a disk-based program for counting k-mers from FASTQ/FASTA files.
knitro/12.0.0/gnu-4.9.2 Adds Knitro solver 12.0.0 to your environment.
lammps/3Mar20/plumed-colvars/intel-2018 Adds LAMMPS 3Mar20 to your environment. LAMMPS is a GPL molecular dynamics code which shows exceptional scaling on a wide variety of machines. Binary is lmp_mpi or lmp_default. This version was built with packages kspace, manybody, molecule, rigid, lib-linalg, user-colvars and user-plumed.
lammps/7Aug19/basic/intel-2018 Adds LAMMPS 7Aug19 to your environment. Binary is lmp_default.
lammps/7Aug19/gpu/intel-2018 Adds LAMMPS 7Aug19 to your environment. Binary is lmp_default.
lammps/7Aug19/userintel/intel-2018 Adds LAMMPS 7Aug19 to your environment. Binary is lmp_default.
lammps/8Dec15/intel-2015-update2 Adds LAMMPS 8Dec15 to your environment. Binary is lmp_default.
lammps/10Feb15/intel-2015-update2 Adds LAMMPS 10Feb15 to your environment. Binary is lmp_default.
lammps/13Apr17/intel-2017 Adds LAMMPS 13Apr17 to your environment. Binary is lmp_default.
lammps/16Mar18/basic/intel-2018 Adds LAMMPS 16Mar18 to your environment. Binary is lmp_default.
lammps/16Mar18/gpu/intel-2018 Adds LAMMPS 16Mar18 to your environment. Binary is lmp_default.
lammps/16Mar18/intel-2017 Adds LAMMPS 16Mar18 to your environment. Binary is lmp_default.
lammps/16Mar18/userintel/intel-2018 Adds LAMMPS 16Mar18 to your environment. Binary is lmp_default.
lynx/2.8.9 Adds Lynx Version 2.8.9 to your environment.
mathematica/10.1.0 Adds Mathematica 10.1.0 to your environment.
mathematica/10.2.0 Adds Mathematica 10.2.0 to your environment.
mathematica/10.4.0 Adds Mathematica 10.4.0 to your environment.
mathematica/11.0.1 Adds Mathematica 11.0.1 to your environment.
mathematica/11.2.0 Adds Mathematica 11.2 to your environment.
mathematica/11.3.0 Adds Mathematica 11.3 to your environment.
matlab/full/r2015a/8.5 Adds Matlab R2015a for SPM to your environment.
matlab/full/r2015b/8.6 Adds Matlab R2015b to your environment.
matlab/full/r2016b/9.1 Adds Matlab R2016b to your environment.
matlab/full/r2017a/9.2 Adds Matlab R2017a to your environment.
matlab/full/r2018a/9.4 Adds Matlab R2018a to your environment.
matlab/full/r2018b/9.5 Adds Matlab R2018b to your environment.
matlab/full/r2019b/9.7 Adds Matlab R2019b to your environment.
mcl/14-137 Adds MCL 14-137 your environment.
meep/1.3-ompi/gnu-4.9.2 Adds meep 1.3-ompi to your environment.
meep/1.3/gnu-4.9.2 Adds meep 1.3 to your environment.
meep/1.11.0-ompi/gnu-4.9.2 Adds meep 1.11.0-ompi to your environment. MEEP is a package for electromagnetics simulation via the finite-diffe rence time-domain (FDTD) method.
meme/4.10.1_4 Adds MEME Suite 4.10.1_4 to your environment. The MEME Suite: Motif-based sequence analysis tools. This install is for the command-line tools and connects to their website for further analysis. Web: http://meme-suite.org
mgltools/1.5.6 Adds MGLTools 1.5.6 to your environment. Applications for visualization and analysis of molecular structures. Contains AutoDockTools (ADT), Python Molecular Viewer (PMV) and Vision.
mirdeep/2.0.0.7 Adds mirdeep 2.0.0.7 to your environment.
molden/5.2.2 Adds Molden 5.2.2 to your environment.
molpro/2012.1.25/gnu-4.9.2 Adds Molpro to your environment
molpro/2015.1.3 Adds Molpro 2015.1.3 binary (no Infiniband support) to your environment.
molpro/2015.1.5/intel-2015-update2 Adds Molpro 2015.1.5 built from source with MPI to your environment.
mosek/9.1.12 Adds Mosek 9.1.12 to your environment.
mothur/1.41.3-bindist Mothur is an expandable, multi-purpose bioinformatics tool aimed at microbial ecology.
mpb/1.5-ompi/gnu-4.9.2 Adds mpb 1.5 to your environment.
mpb/1.5/gnu-4.9.2 Adds mpb 1.5 to your environment.
mpb/1.9.0-hdf5-ompi/gnu-4.9.2 Adds serial mpb 1.9.0 to your environment. Built with HDF5-ompi for use by parallel MEEP.
mrbayes/3.2.5/mpi/intel-2015-update2 Adds MrBayes 3.2.5 to your environment
mrbayes/3.2.5/serial/intel-2015-update2 Adds MrBayes 3.2.5 to your environment
mrtrix/0.3.12/nogui Adds MRtrix3 0.3.12 to your environment. MRtrix3 provides a set of tools to perform analysis of diffusion MRI data, based around the concept of spherical deconvolution and probabilistic tractography. Note: mrview and shview cannot be run over a remote X11 connection so are not usable.
mrtrix/0.3.16/gnu-4.9.2/nogui MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density.
mrtrix/3.0rc3/gnu-4.9.2/nogui Adds MRtrix 3.0RC3 to your environment.
mstor/2013/gnu-4.9.2 MSTor is a program for calculating partition functions, free energies, enthalpies, entropies, and heat capacities of complex molecules including torsional anharmonicity.
mumax/3.9.3 Adds Mumax 3.9.3 to your environment.
mummer/3.23/gnu-4.9.2 Adds MUMmer 3.23 to your environment. MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form.
muscle/3.8.31 Adds MUSCLE 3.8.31 to your environment.
mutect/1.1.7 Adds MuTect 1.1.7 to your environment. MuTect is a GATK-based variant caller specialized for somatic/cancer variants.
namd/2.10/intel-2015-update2 Adds NAMD 2.10 to your environment
namd/2.11/intel-2015-update2 Adds NAMD 2.11 to your environment
namd/2.12/intel-2015-update2 Adds NAMD 2.12 to your environment
namd/2.12/intel-2017-update1 Adds NAMD 2.12 to your environment
namd/2.12/intel-2018-update3 Adds NAMD 2.12 to your environment
namd/2.13/intel-2018-update3 Adds NAMD 2.13 to your environment
namd/2.13/plumed/intel-2018-update3 Adds NAMD 2.13 to your environment
nco/4.5.0 Adds nco to your environment.
nektar++/4.3.5-impi/intel-2017-update1 Adds Nektar++ Version 4.3.5 to your environment
nektar++/4.3.5-ompi/gnu-4.9.2 Adds Nektar++ Version 4.3.5 to your environment
ngsutils/0.5.9 Adds a set of python scripts for handling various NGS tasks to your environment.
nighres/1.1.0b Adds Nighres to your environment.
nonmem/7.3.0/gnu-4.9.2 Adds NONMEM 7.3.0 using GCC Fortran 4.9.2 to your environment.
nonmem/7.3.0/intel-2015-update2 Adds NONMEM 7.3.0 using Intel Fortran 2015 to your environment.
novocraft/3.04.06 Adds novocraft 3.04.06 to your environment. Novocraft is a set of tools for bioinformatics, including Novoalign for short-read mapping.
nwchem/6.5-r26243/atlas/intel-2015-update2 Adds NWChem 6.5 revision 26243 to your PATH, creates symlink to global .nwchemrc. You may need to alter/remove any old ~/.nwchemrc. Built with Python 2.7 interface and ATLAS. Global .nwchemrc: /shared/ucl/apps/nwchem/6.5-r26243-atlas/intel-2015-update2.nwchemrc
nwchem/6.5-r26243/intel-2015-update2 Adds NWChem 6.5 revision 26243 to your PATH, creates symlink to global .nwchemrc. You may need to alter/remove any old ~/.nwchemrc. Built with Python 2.7 interface and MKL with ScaLAPACK. Global .nwchemrc: /shared/ucl/apps/nwchem/6.5-r26243/intel-2015-update2/.nwchemrc
nwchem/6.6-r27746/intel-2015-update2 Adds NWChem 6.6 revision 27746 patched 2016-01-20 to your PATH, creates symlink to global .nwchemrc. You may need to alter/remove any old ~/.nwchemrc. Built with Python 2.7 interface and MKL with ScaLAPACK. Global .nwchemrc: /shared/ucl/apps/nwchem/6.6-r27746/intel-2015-update2/.nwchemrc
nwchem/6.6-r27746/intel-2017 Adds NWChem 6.6 revision 27746 patched 2016-01-20 to your PATH, creates symlink to global .nwchemrc. You may need to alter/remove any old ~/.nwchemrc. Built with Python 2.7 interface and MKL with ScaLAPACK. Global .nwchemrc: /shared/ucl/apps/nwchem/6.6-r27746/intel-2017/.nwchemrc
nwchem/6.8-47-gdf6c956/intel-2017 Adds NWChem 6.8 47-gdf6c956 to your PATH, creates symlink to global .nwchemrc. You may need to alter/remove any old ~/.nwchemrc. Built with Python 2.7 interface and MKL with ScaLAPACK. Global .nwchemrc: /shared/ucl/apps/nwchem/6.8-47-gdf6c956/intel-2017/.nwchemrc
oasislmf/1.2.4 Oasis LMF 1.2.4
oasislmf/ktools/3.0.3/gnu-4.9.2 OasisLMF ktools package built with the GNU compilers
oasislmf/ktools/f92a41f/gnu-4.9.2 OasisLMF ktools package built with the GNU compilers
octave/4.4.1 Octave is an open source competitor to Matlab which is mostly compatible with Matlab.
octopus/4.1.2-impi/intel-2015-update2 Adds octopus 4.1.2 to your environment.
octopus/4.1.2/intel-2015-update2 Adds octopus 4.1.2 to your environment.
octopus/5.0.1-ompi/gnu-4.9.2 Adds octopus 5.0.1 to your environment.
octopus/5.0.1/gnu-4.9.2 Adds octopus 5.0.1 to your environment.
octopus/6.0-ompi/gnu-4.9.2 Adds octopus 6.0 to your environment.
octopus/6.0/gnu-4.9.2 Adds octopus 6.0 to your environment.
openbabel/2.4.1/gnu-4.9.2 OpenBabel is a library and command-line tool for manipulating and converting between various chemistry file formats.
opencv/2.4.13/gnu-4.9.2 Adds OpenCV 2.4.13 to your environment. Open Source Computer Vision Library.
opencv/3.4.1/gnu-4.9.2 Adds OpenCV 3.4.1 to your environment. Open Source Computer Vision Library.
openfoam/2.3.1/intel-2015-update2 Adds OpenFOAM 2.3.1 to your environment
openfoam/2.4.0/intel-2017-update1 Adds OpenFOAM 2.4.0 to your environment
openfoamplus/v1706/gnu-4.9.2 Adds OpenFOAMplus v1706 to your environment
openfoamplus/v1906/gnu-7.3.0 Adds OpenFOAMplus v1906 to your environment
openmm/7.3.1/cuda-10 Adds OpenMM to your environment.
openmm/7.3.1/gnu-4.9.2 Adds OpenMM to your environment.
openmx/3.8.3 Adds OpenMX 3.8.3 to your environment.
optimet/1.0.1/gnu-4.9.2 Adds Optimet to your environment.
p7zip/15.09/gnu-4.9.2 Adds p7zip 15.09 to your environment. To expand 7z files: 7za x archive.7z
pandoc/1.19.2.1 Adds pandoc Version 1.19.2.1 to your environment.
parallel/20181122 GNU parallel is a shell tool for executing jobs in parallel using one or more computers.
paraview/5.3.0 This module adds the ParaView 5.3.0 binaries to your environment. ParaView is an open-source, multi-platform data analysis and visualization application.
parmed/3.2.0 Adds ParmEd to your environment.
petsc/3.12.1/gnu-4.9.2 Adds Petsc 3.12.1 to your environment
phon/1.39/gnu-4.9.2 Adds Phon 1.3.9 with addons to your PATH.
phon/1.43/gnu-4.9.2 Adds Phon 1.43 with addons to your PATH.
picard-tools/1.136 Adds Picard Tools 1.136 to your environment. If using the java -jar command, you should pass TMP_DIR=$TMPDIR to Picard.
picard-tools/2.18.9 Adds Picard Tools to your environment. If using the java -jar command, you should pass TMP_DIR=$TMPDIR to Picard.
platypus/3e72641 Adds Platypus to your environment.
plink/1.07 Adds Plink 1.07 with addons to your PATH.
plink/1.90b3.40 Adds PLINK 1.90b3.40 to your environment. A comprehensive update to the PLINK association analysis toolset.
plink/2.0alpha-git Adds PLINK 2.0 alpha to your environment. A comprehensive update to the PLINK association analysis toolset.
plumed/2.1.2/intel-2015-update2 Adds PLUMED 2.1.2 to your environment, built using OpenBLAS
plumed/2.2.3/intel-2015-update2 Adds PLUMED 2.2.3 to your environment, built using OpenBLAS and libmatheval
plumed/2.2/intel-2015-update2 Adds PLUMED 2.2 to your environment, built using OpenBLAS
plumed/2.3.1/intel-2017-update1 Adds PLUMED 2.3.1 to your environment, built using OpenBLAS and libmatheval
plumed/2.4.1/gnu-4.9.2 Adds PLUMED 2.4.1 to your environment, built using OpenBLAS and libmatheval
plumed/2.4.1/intel-2017-update4 Adds PLUMED 2.4.1 to your environment, built using OpenBLAS and libmatheval
plumed/2.4.3/intel-2018 Adds PLUMED 2.4.3 to your environment, built using MKL and libmatheval
plumed/2.5.2/intel-2018 Adds PLUMED 2.5.2 to your environment, built using MKL and libmatheval
plumed/2.6.0/intel-2018 Adds PLUMED 2.6.0 to your environment, built using MKL and libmatheval
postgres+postgis/9.5.3+2.2.2/gnu-4.9.2 Adds postgres+postgis 9.5.3+2.2.2 to your environment. PostgreSQL is a relational database, and PostGIS is a geographical information enhancement for PostgreSQL.
postgresql/9.5.3/gnu-4.9.2 Adds postgresql 9.5.3 to your environment. PostgreSQL is a relational database.
primer3/2.3.6 This module adds the primer3 package to your environment.
probabel/0.4.5/gnu-4.9.2 Adds ProbABEL to your environment.
proj.4/4.9.1 Adds the PROJ.4 Cartographic Projections library to your environment.
proj.4/5.2.0 Adds the PROJ.4 Cartographic Projections library to your environment.
proj.4/6.0.0 Adds the PROJ.4 Cartographic Projections library to your environment.
proj.4/6.1.0 Adds the PROJ.4 Cartographic Projections library to your environment.
proovread/2.13.11-8Jan2016-f6a856a Adds proovread 2.13.11-8Jan2016-f6a856a to your environment. f6a856a is the commit for this version.
pymol/1.7.7.2 Adds PyMol to your environment.
pymol/1.8.2.1 Adds PyMol to your environment.
pyrosetta/release-73 Adds PyRosetta to your environment.
pytorch/1.2.0/cpu Adds PyTorch 1.2.0 to your environment.
pytorch/1.2.0/gpu Adds PyTorch 1.2.0 to your environment.
qctool/2/beta/ba5eaa44a62f This module adds qctool v2 beta to your environment.
quantum-espresso/5.2.0-impi/intel-2015-update2 Adds quantum-espresso 5.2.0 to your environment.
quantum-espresso/6.1-impi/intel2017 Adds quantum-espresso 6.1 to your environment.
quantum-espresso/6.3-impi/thermo_pw-1.0.9/intel-2018 Adds quantum-espresso 6.3 + thermo_pw 1.0.9 to your environment.
quantum-espresso/6.4.1-impi/intel-2018 Adds quantum-espresso 6.4.1 to your environment.
quantum-espresso/6.5-impi/intel-2018 Adds quantum-espresso 6.5 to your environment.
quantum-espresso/6.5-impi/thermo_pw-1.2.1/intel-2018 Adds quantum-espresso 6.5 + thermo_pw 1.2.1 to your environment.
r/3.2.0-atlas/gnu-4.9.2 Adds R 3.2.0 and Bioconductor 3.2 to your environment.
r/3.2.2-openblas/gnu-4.9.2 Adds R 3.2.2 and Bioconductor 3.2 to your environment.
r/3.3.0-openblas/gnu-4.9.2 Adds R 3.3.0 and Bioconductor 3.3 to your environment.
r/3.3.2-openblas/gnu-4.9.2 Adds R 3.3.2 and Bioconductor 3.4 to your environment.
r/3.4.0-openblas/gnu-4.9.2 Adds R 3.4.0 and Bioconductor 3.5 to your environment.
r/3.4.2-openblas/gnu-4.9.2 Adds R 3.4.2 and Bioconductor 3.6 to your environment.
r/3.5.0-openblas/gnu-4.9.2 Adds R 3.5.0 and Bioconductor 3.7 to your environment.
r/3.5.1-openblas/gnu-4.9.2 Adds R 3.5.1 and Bioconductor 3.7 to your environment.
r/3.5.3-openblas/gnu-4.9.2 Adds R 3.5.3 and Bioconductor 3.8 to your environment.
r/3.6.0-openblas/gnu-4.9.2 Adds R 3.6.0 and Bioconductor 3.9 to your environment.
randfold/2.0/gnu-4.9.2 Adds randfold 2.0 to your environment.
rclone/1.51.0 RClone is a command-line program intended to download and upload files from and to various storage services and providers.
repast-hpc/2.1/gnu-4.9.2 Adds Repast HPC 2.1 compiled with GCC 4.9.2 and OpenMPI to your environment.
root/5.34.30/gnu-4.9.2 Adds ROOT 5.34.30 to your environment.
root/5.34.30/gnu-4.9.2-fftw-3.3.6 Adds ROOT 5.34.30 to your environment.
root/5.34.36/gnu-4.9.2-fftw-3.3.6 Adds ROOT 5.34.36 to your environment.
root/5.34.36/gnu-4.9.2-fftw-3.3.6-gsl-2.4 Adds ROOT 5.34.36 to your environment.
root/6.04.00/gnu-4.9.2 Adds ROOT 6.04.00 to your environment.
rosetta/2015.31.58019 Adds Rosetta 2015.31.58019 to your environment.
rosetta/2015.31.58019-mpi Adds Rosetta 2015.31.58019 with MPI to your environment.
rosetta/2018.48.60516 Adds Rosetta 2018.48.60516 serial version to your environment.
rosetta/2018.48.60516-mpi Adds Rosetta 2018.48.60516 MPI version to your environment.
rsem/1.2.31 Adds RSEM 1.2.31 to your environment.
sac/101.6a Adds SAC 101.6a to your environment.
sambamba/0.6.7-bindist A tool for extracting information from SAM/BAM files.
samblaster/0.1.24/gnu-4.9.2 samblaster is a program for marking duplicates in read-id grouped paired-end SAM files.
samsrf/5.84/matlab.r2019b Adds the SamSrf Matlab toolbox to your environment
samtools/0.1.19 This module adds the Samtools 0.1.19 package to your environment.
samtools/1.2/gnu-4.9.2 Adds SAMtools 1.2 to your environment. Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format.
samtools/1.3.1/gnu-4.9.2 Adds SAMtools 1.3.1 to your environment. Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format.
samtools/1.9/gnu-4.9.2 Adds SAMtools 1.9 to your environment. Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format.
sas/9.4-M6/64 Adds SAS 9.4 (9.04.01M6) 64 bit to your environment
sas/9.4/64 Adds SAS 9.4 64 bit to your environment
sc/7.16 Adds sc 7.16 to your environment.
siesta/4.0.1/intel-2017 Adds SIESTA 4.0.1 to your environment.
skewer/0.2.2 Adds skewer 0.2.2 to your environment.
smalt/0.7.6/gnu-4.9.2 Adds SMALT 0.7.6 to your environment. SMALT aligns DNA sequencing reads with a reference genome. Compiled with bambamc support for SAM/BAM input and BAM output.
snptest/2.5.4-beta3 Adds SNPtest 2.5.4-beta3 to your environment.
sod/3.2.7 Adds SOD 3.2.7 to your environment. SOD is a program that automates tedious data selection, downloading, and routine processing tasks in seismology.
spm/8/r6313/matlab.r2015a Adds SPM8 to your environment
spm/12/jan2020/matlab.r2019b Adds SPM12 to your environment
spm/12/r6470/matlab.r2015a Adds SPM12 to your environment
spss/24 Adds SPSS 24 to your environment
spss/25 Adds SPSS 25 to your environment
spss/26 Adds SPSS 26 to your environment
sqlite/3.31.1/gnu-9.2.0 Adds SQLite Version 3.31.1 to your environment.
star-ccm+/9.06.011 Adds STAR-CCM+ and STAR-View to your environment.
star-ccm+/11.04.010-R8 Adds STAR-CCM+ and STAR-View to your environment.
star-ccm+/12.04.010 Adds STAR-CCM+ and STAR-View to your environment.
star-ccm+/13.02.011 Adds STAR-CCM+ and STAR-View to your environment.
star-ccm+/13.06.012 Adds STAR-CCM+ and STAR-View to your environment.
star-ccm+/14.06.013 Adds STAR-CCM+ and STAR-View to your environment.
star-cd/4.22.058 Adds STAR-CD 4.22.058 to your environment.
star-cd/4.26.011 Adds STAR-CD 4.26.011 using Intel 2016 compiler suite to your environment. STAR-CD is a code for performing CFD simulations. It is designed for modelling fluid flow, heat transfer, mass transfer and chemical reactions.
star-cd/4.26.022 Adds STAR-CD 4.26.022 using Intel 2016 compiler suite to your environment. STAR-CD is a code for performing CFD simulations. It is designed for modelling fluid flow, heat transfer, mass transfer and chemical reactions.
star-cd/4.28.050 Adds STAR-CD 4.28.050 using Intel 2016 compiler suite to your environment. STAR-CD is a code for performing CFD simulations. It is designed for modelling fluid flow, heat transfer, mass transfer and chemical reactions.
star/2.5.2a Adds STAR 2.5.2a to your environment.
star/2.7.3a Adds STAR 2.7.3a to your environment.
stata/14 Adds Stata/MP 14 to your environment.
stata/15 Adds Stata/MP 15 to your environment.
supermagic/1.2/intel-2017 Adds supermagic 1.2 to your environment. Supermagic is a simple MPI sanity test.
taup/2.1.2 adds TauP 2.1.2 to your environment variables
tensorflow/1.4.1/cpu Adds Tensorflow 1.4.1 to your environment.
tensorflow/1.4.1/gpu Adds Tensorflow 1.4.1 to your environment.
tensorflow/1.4.1/mkl Adds Tensorflow 1.4.1 to your environment.
tensorflow/1.8.0/cpu Adds Tensorflow 1.8.0 to your environment.
tensorflow/1.8.0/gpu Adds Tensorflow 1.8.0 to your environment.
tensorflow/1.8.0/mkl Adds Tensorflow 1.8.0 to your environment.
tensorflow/1.12.0/cpu Adds Tensorflow 1.12.0 to your environment.
tensorflow/1.12.0/gpu Adds Tensorflow 1.12.0 to your environment.
tensorflow/1.12.0/mkl Adds Tensorflow 1.12.0 to your environment.
tensorflow/1.13.1/cpu Adds Tensorflow 1.13.1 to your environment.
tensorflow/1.13.1/gpu Adds Tensorflow 1.13.1 to your environment.
tensorflow/1.13.1/mkl Adds Tensorflow 1.13.1 to your environment.
tensorflow/1.14.0/cpu Adds Tensorflow 1.14.0 to your environment.
tensorflow/1.14.0/gpu Adds Tensorflow 1.14.0 to your environment.
tensorflow/1.14.0/mkl Adds Tensorflow 1.14.0 to your environment.
tensorflow/2.0.0/gpu-py37 Adds Tensorflow 2.0.0 to your environment.
tensorflow/2.0.0/gpu-py37-cudnn75 Adds Tensorflow 2.0.0 to your environment.
tensorflow/2.0.0/mkl-py37 Adds Tensorflow 2.0.0 to your environment.
tephra2/2.0/gnu-4.9.2 Adds Tephra2 version 2.0 to your environment.
tephra2/normal/r149 Adds Tephra2 version r149 to your environment.
tesseract/3.05.01 Adds Tesseract 3.05.01 to your environment.
texinfo/5.2/gnu-4.9.2 Adds GNU texinfo 5.2 to your environment.
texinfo/6.6/gnu-4.9.2 Adds GNU texinfo 6.6 to your environment.
texlive/2014 Adds TeX Live 2014 to your environment.
texlive/2015 Adds TeX Live 2015 to your environment.
texlive/2019 Adds TeX Live 2019 to your environment.
textract/1.5.0 Adds textract 1.5.0 to your environment. textract extracts text from a wide range of document types.
tmux/2.2 This module adds the tmux 2.2 package to your environment.
tophat/2.1.0 Adds Tophat 2.1.0 to your environment.
tracer/1.6 Adds Tracer 1.6.
tractor/3.2.5 Adds TractoR 3.2.5 to your environment.
tree/1.7.0 Adds tree 1.7.0 to your environment. This shows your directory structure as a tree.
trim_galore/0.4.1 Adds Trim Galore 0.4.1 to your environment. A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files.
trimmomatic/0.33 Adds Trimmomatic 0.33 to your environment. A flexible read trimming tool for Illumina NGS data.
turbomole/6.4/mpi Adds turbomole 6.4 (using MPI) to your environment.
turbomole/6.4/serial Adds turbomole 6.4 (serial) to your environment.
turbomole/6.4/smp Adds turbomole 6.4 (using SMP) to your environment.
turbomole/6.5/mpi Adds turbomole 6.5 (using MPI) to your environment.
turbomole/6.5/serial Adds turbomole 6.5 (serial) to your environment.
turbomole/6.5/smp Adds turbomole 6.5 (using SMP) to your environment.
turbomole/6.6/mpi Adds turbomole 6.6 (using MPI) to your environment.
turbomole/6.6/serial Adds turbomole 6.6 (serial) to your environment.
turbomole/6.6/smp Adds turbomole 6.6 (using SMP) to your environment.
ubpred/1-bin32dist UbPred is a random forest-based predictor of potential ubiquitination sites in proteins.
udunits/2.2.19 Adds udunits to your environment.
udunits/2.2.20/gnu-4.9.2 adds the UDUNITS-2 package to your environment.
udunits/2.2.26/gnu-4.9.2 adds the UDUNITS-2 package to your environment.
varscan/2.3.9 Adds VarScan v2.3.9 to your environment. VarScan is a platform-independent mutation caller for targeted, exome, and whole-genome resequencing data generated on Illumina, SOLiD, Life/PGM, Roche/454, and similar instruments.
vasp/5.4.1-05feb16-p2/intel-2015-update2 The VASP Quantum Chemistry package, version 5.4.1-05feb16 with patches 1 and 2.
vasp/5.4.1-24jun15-p2-vtst-r160/intel-2015-update2 Adds VASP 5.4.1 built with VTST r160 to your environment.
vasp/5.4.1-24jun15-p08072015/intel-2015-update2 The VASP Quantum Chemistry package, version 5.4.1-24jun15 with patch 08072015.
vasp/5.4.4-18apr2017-libbeef/intel-2017-update1 Adds VASP 5.4.4 with BEEF-vdW functionals to your environment.
vasp/5.4.4-18apr2017-vtst-r178/intel-2017-update1 Adds VASP 5.4.4 built with VTST r178 to your environment.
vasp/5.4.4-18apr2017/intel-2017-update1 Adds VASP 5.4.4 to your environment.
vcftools/0.1.15/gnu-4.9.2 Adds VCFtools version 0.1.15 to your environment. Tools for working with VCF files.
velvet/1.2.10 Adds Velvet 1.2.10 to your environment.
vep/95.0 Adds VEP 95.0 to your environment.
vesta/3.4.6-bindist VESTA is a 3D visualization program for structural models, volumetric data such as electron/nuclear densities, and crystal morphologies.
vg/1.11.0 This is a module with no description string.
viennarna/2.1.9/gnu-4.9.2 Adds viennarna 2.1.9 to your environment.
vinalc/1.1.2/gnu-4.9.2 Adds VinaLC to your environment.
visit/2.9.2 This package adds VisIt 2.9.2 to your environment. VisIt is a distributed, parallel visualization and graphical analysis tool for data defined on two- and three-dimensional (2D and 3D) meshes. Visit will create a ~/.visit directory and a ~/Scratch/visit directory. Jobfiles created by the GUI will go in the latter. Legion hostfile: /shared/ucl/apps/visit/2.9.2/gnu-4.9.2/host_legion.xml Web: https://wci.llnl.gov/simulation/computer-codes/visit/
vmd/1.9.3/GL+CUDA VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
vmd/1.9.3/text-only The binary, text only version of VMD 1.9.3
vt/2018-08-01/gnu-4.9.2 [ref:f6d2b5dab73c] A tool set for short variant discovery in genetic sequence data.
xmds/2.2.2 Adds XMDS 2.2.2 (GNU/ATLAS/Intel MPI/FFTW toolchain) to your environment.
xtalopt/r12.1/gnu-4.9.2 Adds XtalOpt r12.1 to your environment.
xulrunner/3.6.28/gnu-4.9.2 Adds XULRunner 3.6.28 to your environment. XULRunner is a Mozilla runtime package that can be used to bootstrap XUL+XPCOM applications. This version was built including javaxpcom.
xulrunner/10.0.2 Adds the XULRunner 3.6.28 64-bit runtime binaries to your environment. XULRunner is a Mozilla runtime package that can be used to bootstrap XUL+XPCOM applications.
yambo/4.1.4/intel-2017 This is a module with no description string.

Libraries§

Modules in this section set up your environment to use specific C, C++, or Fortran libraries. This can include being able to use them with other languages, like Python.

Module Description
apr-util/1.5.4 adds APR-util 1.5.4 to your environment variables
apr/1.5.2 adds APR 1.5.2 to your environment variables
argtable/2.13 Adds argtable 2.13 to your environment.
armadillo/7.400.3/intel-2015-update2 Adds armadillo 7.400.3 to your environment. Armadillo is a linear alebra library for C++, aiming to balance speed and ease of use.
arpack-ng/3.4.0/intel-2015-update2 Adds arpack-ng 3.4.0 to your environment. ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
arpack-ng/3.5.0/gnu-4.9.2-serial Adds arpack-ng 3.5.0 to your environment. ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
arpack-ng/3.5.0/gnu-4.9.2-threaded Adds arpack-ng 3.5.0 to your environment. ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
arpack-ng/3.5.0/intel-2017 Adds arpack-ng 3.5.0 to your environment. ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
atlas/3.10.2/gnu-4.9.2 adds ATLAS 3.10.2 for GCC 4.9.2 compilers to your environment variables
atlas/3.10.2/intel-2015-update2 adds ATLAS 3.10.2 for Intel 15 compilers to your environment variables
bambamc/0.0.50/gnu-4.9.2 Adds bambamc 0.0.50 to your environment. bambamc is a lightweight C implementation of the read name collation code from the larger libmaus/biobambam C++ project.
boost/1_54_0/gnu-4.9.2 Adds Boost 1.54.0 with Python libraries to your environment.
boost/1_54_0/mpi/gnu-4.9.2 Adds Boost 1.54.0 with Python and MPI libraries to your environment.
boost/1_54_0/mpi/gnu-4.9.2-ompi-1.10.1 Adds Boost 1.54.0 with Python and MPI libraries to your environment.
boost/1_54_0/mpi/intel-2015-update2 Adds Boost 1.54.0 with Python and MPI libraries to your environment.
boost/1_63_0/gnu-4.9.2 Adds Boost 1.63.0 with Python libraries to your environment.
boost/1_63_0/mpi/gnu-4.9.2 Adds Boost 1.63.0 with Python and MPI libraries to your environment.
boost/1_63_0/mpi/intel-2017-update1 Adds Boost 1.63.0 with Python and Intel MPI libraries to your environment.
cernlib/2006-35 Adds the CERN Program library to your environment. 2006-35 EL6 RPM binaries.
cernlib/2006/gnu-4.9.2 Adds the CERN Program library to your environment
cfitsio/3370/gnu-4.9.2 Adds cfitsio 3370 to your environment.
cfitsio/3370/intel-2015-update2 Adds cfitsio 3370 to your environment.
cgal/4.9/gnu-4.9.2 Adds CGAL 4.9 with Qt5 to your environment. The Computational Geometry Algorithms Library.
clusteringsuite/2.6.6/bindist Adds clusteringsuite 2.6.6 to your environment. Clustering Suite is a set of tools to automatically expose the main performance trends in applications' computation structure.
cunit/2.1-3/gnu-4.9.2 Adds cunit 2.1-3 to your environment. CUnit is a package for writing and running unit tests in C.
cvmfs/2.2.1/gnu-4.9.2 Adds libcvmfs 2.2.1 to your environment.
dyninst/9.3.2/gnu-4.9.2 Adds dyninst 9.3.2 to your environment. DynInst is a library for performing dynamic instrumentation of executables.
eigen/3.2.5/gnu-4.9.2 adds Eigen for GCC 4.9.2 compilers to your environment variables
elfutils/0.170/gnu-4.9.2 Adds elfutils 0.170 to your environment. Elfutils provides utilities for manipulating binary ELF files, and is one possible provider of libelf.
fftw/2.1.5/gnu-4.9.2 adds FFTW 2.1.5 for GCC 4.9.2 compilers to your environment variables
fftw/2.1.5/intel-2015-update2 adds FFTW 2.1.5 for Intel compilers to your environment variables
fftw/3.3.4-impi/gnu-4.9.2 Adds fftw 3.3.4 (built with Intel MPI) to your environment.
fftw/3.3.4-impi/intel-2017-update1 Adds fftw 3.3.4 (built with Intel MPI) to your environment.
fftw/3.3.4-ompi-1.10.1/gnu-4.9.2 Adds fftw 3.3.4 (built with OpenMPI) to your environment.
fftw/3.3.4-ompi/gnu-4.9.2 Adds fftw 3.3.4 (built with OpenMPI) to your environment.
fftw/3.3.4-threads/gnu-4.9.2 adds FFTW 3.3.4 for GCC 4.9.2 compilers to your environment variables
fftw/3.3.4/gnu-4.9.2 adds FFTW 3.3.4 for GCC 4.9.2 compilers to your environment variables
fftw/3.3.4/intel-2015-update2 adds FFTW 3.3.4 for Intel compilers to your environment variables
fftw/3.3.6-pl2/gnu-4.9.2 Adds FFTW 3.3.6 pl2 for GCC 4.9.2 compilers to your environment variables. Includes single and double precision only on Legion, plus long-double and quad on Grace/Thomas. Includes OpenMP and POSIX threads libraries.
fftw/3.3.6-pl2/intel-2017 Adds FFTW 3.3.6 pl2 for Intel compilers to your environment variables. Includes single and double precision versions on Legion, plus long-double on Grace/Thomas. Includes OpenMP and POSIX threads libraries.
fftw/3.3.8-impi/intel-2018 Adds fftw fftw (built with Intel MPI) to your environment.
fftw/3.3.8-ompi/gnu-4.9.2 Adds fftw 3.3.8 (built with OpenMPI) to your environment.
forge/1.0.0/gnu-4.9.2 Adds forge 1.0.0 to your environment.
freeimage/3.17.0/gnu-4.9.2 Adds FreeImage 3.17.0 to your environment.
freetype/2.8.1/gnu-4.9.2 Adds freetype 2.8.1 to your environment. FreeType is a freely available software library to render fonts.
ga/5.7-8BInts/intel-2018 Global Arrays (GA) is a library that provides a Partitioned Global Address Space (PGAS) programming model. This version has been compiled with 8-byte integers in the Fortran code.
ga/5.7/intel-2018 Global Arrays (GA) is a library that provides a Partitioned Global Address Space (PGAS) programming model.
gcc-libs/4.9.2 adds GCC 4.9.2 runtime to your evironment.
geos/3.5.0/gnu-4.9.2 Adds geos 3.5.0 to your environment. GEOS (Geometry Engine, Open Source) is a library for performing various spatial operations, especially for boolean operations on GIS data. Note this version does not include the SWIG, Python, Ruby, or PHP bindings.
gflags/2.2.1 Adds Google gflags 2.2.1 to your environment.
giflib/5.1.1 Adds giflib 5.1.1 to your environment. A library and utilities for processing gifs.
glbinding/2.1.2/gnu-4.9.2 Adds glbinding 2.1.2 to your environment.
glew/1.13.0/gnu-4.9.2 Adds GLEW The OpenGL Extension Wrangler Library 1.11.0 to your environment.
glfw/3.2.1/gnu-4.9.2 Adds GLFW 3.2.1 to your environment.
glog/0.3.5 Adds Google glog 0.3.5 to your environment.
glpk/4.60/gnu-4.9.2 Adds the GNU Linear Programming Kit Version 4.60 for GCC 4.9.2 to your environment.
gsl/1.16/gnu-4.9.2 adds GSL 1.16 for GCC 4.9.2 to your environment.
gsl/1.16/intel-2015-update2 Adds gsl 1.16 to your environment.
gsl/2.4/gnu-4.9.2 adds GSL 2.4 for GCC 4.9.2 to your environment.
gsl/2.4/intel-2017 adds GSL 2.4 for Intel 2017 to your environment.
gstreamer/1.12.0 GStreamer is a library for constructing graphs of media-handling components, including codecs for various audio and video formats.
gulp/4.5/libgulp/intel-2018 Adds GULP 4.5 library version to your environment. Built libgulp only, without FoX, for programs such as ChemShell to link. GULP is a materials simulation code.
h5py/2.10.0-ompi/gnu-4.9.2 Adds h5py 2.10.0-ompi for Python 3.7 to your environment.
harminv/1.4.1/gnu-4.9.2 Adds harminv 1.4.1 to your environment.
harminv/1.4/gnu-4.9.2 Adds harminv 1.4 to your environment.
hdf/5-1.8.15-p1-impi/intel-2015-update2 Adds hdf5 1.8.5-p1 (built with Fortran and IntelMPI options) to your environment.
hdf/5-1.8.15-p1-ompi/gnu-4.9.2 Adds hdf5 1.8.5-p1 (built with Fortran and OpenMPI options) to your environment.
hdf/5-1.8.15/gnu-4.9.2 adds HDF5 1.8.15 (Serial) for GCC 4.9.2 to your environment.
hdf/5-1.8.15/intel-2015-update2 adds HDF5 1.8.15 (Serial) for Intel 2015 to your environment.
hdf/5-1.10.2-impi/intel-2018 adds HDF5 1.10.2 (Parallel) for Intel 2018 to your environment.
hdf/5-1.10.2/intel-2018 adds HDF5 1.10.2 (Serial) for Intel 2018 to your environment.
hdf/5-1.10.5-ompi/gnu-4.9.2 Adds hdf 5-1.10.5-ompi to your environment. Built with OpenMPI and GNU.
hdf/5-1.10.5/gnu-4.9.2 Adds hdf 5-1.10.5 to your environment. Serial version built with GNU.
htslib/1.2.1 This module adds the HTSlib 1.2.1 package to your environment. HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data.
htslib/1.3.1 This module adds the HTSlib 1.3.1 package to your environment. HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data.
htslib/1.7 This module adds the HTSlib 1.7 package to your environment. HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data.
hwloc/1.11.12 The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. This installation includes the optional libnuma dependency.
hypre/2.11.2/openmpi-3.0.0/intel-2017 Adds HYPRE 2.11.2 to your environment.
hypre/2.11.2/openmpi-3.1.1/intel-2018 Adds HYPRE 2.11.2 to your environment.
jansson/2.11 This is a module with no description string.
json-c/0.12/gnu-4.9.2 Adds json-c 0.12 to your environment. JSON-C is a library for converting between JSON-formatted strings and C representations of the equivalent objects.
lapack/3.8.0/gnu-4.9.2 LAPACK is a reference library of routines for Linear Algebra. It is not recommended for use, as its ABI is replicated in the much higher-performance libraries OpenBLAS, MKL, or ATLAS instead.
leptonica/1.74.4 Adds Leptonica 1.74.4 to your environment.
leveldb/1.20 Adds Google leveldb 1.20 to your environment.
libbdwgc/7.4.2/gnu-4.9.2 Adds libbdwgc (a garbage-collector library) to your environment.
libbeef/0.1.3/intel-2018 Library for Bayesian error estimation functionals for use in density functional theory codes: libbeef 0.1.3 commit 2822afe
libctl/3.2.2/gnu.4.9.2 Adds libctl (built using Intel compilers) to your environment.
libctl/4.3.0/gnu-4.9.2 Adds libctl 4.3.0 to your environment.
libdwarf/20170709/gnu-4.9.2 Adds libdwarf 20170709 to your environment. libdwarf is a library for interacting with debugging info in the DWARF 2, 3, and 5 formats.
libelf/0.8.13/gnu-4.9.2 Adds libelf 0.8.13 to your environment.
libetsfio/1.0.4/gnu-4.9.2 Adds libetsfio 1.0.4 to your environment.
libetsfio/1.0.4/intel-2015-update2 Adds libetsfio 1.0.4 to your environment.
libflac/1.3.1/gnu-4.9.2 Adds libflac 1.3.1 to your environment. libFLAC is the Xiph library for handling their lossless audio codec.
libgd/2.1.1/gnu-4.9.2 Adds libgd 2.1.1 to your environment.
libgd/2.1.1/intel-2015-update2 Adds libgd 2.1.1 to your environment.
libgdsii/0.21/gnu-4.9.2 Adds libgdsii 0.21 to your environment. C++ library and command-line utility for reading GDSII geometry files.
libint/1.1.4/gnu-4.9.2 Adds libint 1.1.4 to your environment. Libint is required for CP2K.
libmatheval/1.1.11 Adds libmatheval 1.1.11 to your environment. GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.
libsodium/1.0.6/gnu-4.9.2 Adds libsodium 1.0.6 to your environment. libsodium is a crypto library primarily used by ZeroMQ.
libsox/14.4.2/gnu-4.9.2 Adds libsox 14.4.2 to your environment. SoX is a library for reading, writing, and converting a variety of sound file formats. If you require support for a file format that is not installed, contact rc-support and the library can be rebuilt.
libuuid/1.0.3/gnu-4.9.2 Adds a static libuuid 1.0.3 to your environment.
libxc/2.1.2/intel-2015-update2 Adds libxc 2.1.2 to your environment.
libxc/2.2.2/gnu-4.9.2 Adds libxc 2.2.2 to your environment.
libxc/2.2.2/intel-2015-update2 Adds libxc 2.2.2 to your environment.
libxc/3.0.0/gnu-4.9.2 Adds libxc 3.0.0 to your environment.
libxc/3.0.0/intel-2015-update2 Adds libxc 3.0.0 to your environment.
libxc/4.2.3/intel-2018 libxc is a library of routines implementing a range of exchange-correlation functionals for density-functional theory calculations.
libxml2/2.9.4/gnu-4.9.2 Adds libxml2 2.9.4 to your environment. Libxml2 is an XML C parser and toolkit. Includes Python (2.7.9) bindings.
llvm/3.3 This module adds the LLVM 3.3 package to your environment. The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs.
llvm/3.9.1 This module adds the LLVM 3.9.1 package to your environment. The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs.
llvm/6.0.1 This module adds the LLVM 6.0.1 package to your environment. The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs.
llvm/8.0.0/gnu-4.9.2 The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. This installation includes clang, a C compiler based on LLVM.
lmdb/0.9.22 Adds LMDB 0.9.22 to your environment.
lz4/1.8.3 This is a module with no description string.
magma/2.4.0 This is a module with no description string.
med/4.0.0/gnu-4.9.2 Adds med 4.0.0 to your environment. Allows reading and writing of MED format files.
mesa/6.5/gnu-4.9.2 Adds mesa 6.5 to your environment. Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics. This is an old version installed to satisfy a particular dependency: please do not use for new builds.
mesa/10.6.3 Adds Mesa 10.6.3 to your environment. Mesa is an open-source implementation of the OpenGL specification. (Built for offscreen rendering: OSMesa, Xlib GLX, no Gallium, no EGL, no llvm, no DRI).
mesa/10.6.9/gnu-4.9.2 Adds Mesa 10.6.9 to your environment. Mesa is an open-source implementation of the OpenGL specification. (Built for offscreen rendering: OSMesa, Xlib GLX, no Gallium, no EGL, no llvm, no DRI).
mesa/13.0.6/gnu-4.9.2 Adds Mesa 13.0.6 to your environment. Mesa is an open-source implementation of the OpenGL specification. (Built options: Gallium, LLVM, no EGL, no DRI, no GLX). The default driver is llvmpipe. You can use "export GALLIUM_DRIVER" to explicitly choose llvmpipe, softpipe, or swr
metis/5.1.0/gnu-4.9.2 Adds metis 5.1.0 to your environment. METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices.
metis/5.1.0/intel-2015-update2 Adds metis 5.1.0 to your environment. METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices.
mpi/intel/2013/update1/intel adds Intel MPI 4.1.3.048 to your environment variables
mpi/intel/2015/update3/gnu-4.9.2 adds Intel MPI to your environment variables
mpi/intel/2015/update3/intel adds Intel MPI to your environment variables
mpi/intel/2017/update1/gnu-4.9.2 adds Intel MPI to your environment variables
mpi/intel/2017/update1/intel adds Intel MPI to your environment variables
mpi/intel/2017/update2/gnu-4.9.2 adds Intel MPI to your environment variables configured to use GCC 4.9.2
mpi/intel/2017/update2/intel adds Intel MPI to your environment variables
mpi/intel/2017/update3/gnu-4.9.2 [Intel MPI/2017.3.196] This is Intel's MPI implementation, version 2017.3.196, which is bundled with compiler package version 2017.Update4. This module sets up the compiler wrappers to use GCC 4.9.2 underneath.
mpi/intel/2017/update3/intel [Intel MPI/2017.3.196] This is Intel's MPI implementation, version 2017.3.196, which is bundled with compiler package version 2017.Update4.
mpi/intel/2018/update3/intel [Intel MPI/2018.3.222] This is Intel's MPI implementation, version 2018.3.222, which is bundled with compiler package version 2018.Update3.
mpi/intel/2019/update4/intel [Intel MPI/2019.4.243] This is Intel's MPI implementation, version 2019.4.243, which is bundled with compiler package version 2019.Update4.
mpi/intel/2019/update5/intel [Intel MPI/2019.5.281] This is Intel's MPI implementation, version 2019.5.281, which is bundled with compiler package version 2019.Update5.
mpi/intel/2019/update6/intel [Intel MPI/2019.6.166] This is Intel's MPI implementation, version 2019.6.166, which is bundled with compiler package version 2020.
mpi/openmpi/1.8.4/gnu-4.9.2 adds OpenMPI 1.8.4 for GCC 4.9.2 compilers to your environment variables
mpi/openmpi/1.8.4/intel-2015-update2 adds OpenMPI 1.8.4 for Intel 2015 update 2 compilers to your environment variables
mpi/openmpi/1.10.1/gnu-4.9.2 adds OpenMPI 1.10.1 for GCC 4.9.2 compilers to your environment variables
mpi/openmpi/1.10.1/intel-2015-update2 adds OpenMPI 1.10.1 for Intel 2015 update 2 compilers to your environment variables
mpi/openmpi/2.0.2/gnu-4.9.2 Adds openmpi 2.0.2 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/2.0.2/intel-2017 Adds openmpi 2.0.2 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/2.1.2/gnu-4.9.2 Adds openmpi 2.1.2 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/2.1.2/intel-2017 Adds openmpi 2.1.2 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/3.0.0/gnu-4.9.2 Adds openmpi 3.0.0 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/3.0.0/intel-2017 Adds openmpi 3.0.0 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/3.1.1/gnu-4.9.2 Adds openmpi 3.1.1 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/3.1.1/intel-2018 Adds openmpi 3.1.1 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/3.1.4/gnu-4.9.2 Adds openmpi 3.1.4 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/3.1.4/intel-2018 Adds openmpi 3.1.4 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/3.1.6/gnu-4.9.2 Adds openmpi 3.1.6 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/4.0.3/gnu-4.9.2 Adds openmpi 4.0.3 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi4py/2.0.0/python2 Adds Python2 mpi4py 2.0.0 to your environment. MPI for Python.
mpi4py/2.0.0/python3 Adds Python3 mpi4py 2.0.0 to your environment. MPI for Python.
mpi4py/3.0.0/python3 Adds Python3 mpi4py 3.0.0 to your environment. MPI for Python.
mpi4py/3.0.2/gnu-4.9.2 Adds mpi4py 3.0.2 for Python 3.7 to your environment.
mumps/5.2.1/intel-2018 Adds mumps 5.2.1 to your environment. Sequential version built with Intel and METIS.
mysql-connector-python/2.0.4/python-3.5.2 Adds mysql-connector-python 2.0.4 to your environment. This is Oracle's python-only MySQL connector for Python3
mysql-connector-python/2.0.4/python-3.6.3 Adds mysql-connector-python 2.0.4 to your environment. This is Oracle's python-only MySQL connector for Python3
mysql-connector-python/2.0.4/python-3.7.4 Adds mysql-connector-python 2.0.4 to your environment. This is Oracle's python-only MySQL connector for Python3
mysql-connector-python/2.0.4/python-3.8.0 Adds mysql-connector-python 2.0.4 to your environment. This is Oracle's python-only MySQL connector for Python3
nag/fortran/mark22/gnu-4.9.2 Adds NAG Fortran Library Mark 22 for GCC to your environment.
nag/fortran/mark24/gnu-4.9.2 Adds NAG Fortran Library Mark 24 for GCC to your environment.
nag/fortran/mark24/nag-6.0.1044 Adds NAG Fortran Library Mark 24 for NAG Fortran to your environment.
nag/fortran/mark25/intel-2015-update2 Adds NAG Fortran Library Mark 25 for Intel 2015 to your environment.
nag/fortran/mark26/gnu-4.9.2 Adds NAG Fortran Library Mark 26 for GCC to your environment.
nag/fortran/mark26/intel-2017 Adds NAG Fortran Library Mark 26 for Intel 2017 to your environment.
nag/fortran/mark26/nag-6.1.6106 Adds NAG Fortran Library Mark 26 for NAG Fortran to your environment.
nag/fortran/mark26/nag-6.2.6223 Adds NAG Fortran Library Mark 26 for NAG Fortran to your environment.
nag/mark27/intel-2019 Adds NAG Library Mark 27 for Intel 2019 to your environment.
netcdf-c++/4.2/gnu-4.9.2 adds NetCDF C++ 4.2 for GCC to your environment.
netcdf-c++/4.2/intel-2015-update2 adds NetCDF C++ 4.2 for Intel 2015 to your environment.
netcdf-c++4/4.2/gnu-4.9.2 adds NetCDF C++ 4.2 for GCC to your environment.
netcdf-c++4/4.2/intel-2015-update2 adds NetCDF C++ 4.2 for Intel 2015 to your environment.
netcdf-fortran/4.4.1/gnu-4.9.2 adds NetCDF 4.4.1 for GCC to your environment.
netcdf-fortran/4.4.1/intel-2015-update2 adds NetCDF 4.4.1 for Intel 2015 to your environment.
netcdf/4.3.3.1/gnu-4.9.2 adds NetCDF 4.3.3.1 for GCC 4.9.2 to your environment.
netcdf/4.3.3.1/intel-2015-update2 adds NetCDF 4.3.3.1 for Intel 2015 to your environment.
numactl/2.0.12 numactl provides NUMA policy support, as well as tools and a library to display NUMA allocation statistics and debugging information.
openblas/0.2.14-threads/gnu-4.9.2 adds OpenBLAS 0.2.14 for GCC 4.9.2 compilers to your environment variables
openblas/0.2.14/gnu-4.9.2 adds OpenBLAS 0.2.14 for GCC 4.9.2 compilers to your environment variables
openblas/0.2.14/intel-2015-update2 adds OpenBLAS 0.2.14 for Intel 2015 update 2compilers to your environment variables
openblas/0.3.2-native-threads/gnu-4.9.2 This is a module with no description string.
openblas/0.3.2-openmp/gnu-4.9.2 This is a module with no description string.
openblas/0.3.2-serial/gnu-4.9.2 This is a module with no description string.
openblas/0.3.7-native-threads/gnu-4.9.2 This is a module with no description string.
openblas/0.3.7-openmp/gnu-4.9.2 This is a module with no description string.
openblas/0.3.7-serial/gnu-4.9.2 This is a module with no description string.
papi/5.5.1/gnu-4.9.2 Adds PAPI 5.5.1 to your environment. PAPI is a library for working with performance counters, often used in profiling applications.
parmetis/4.0.3/intel-2015-update2 Adds parmetis 4.0.3 to your environment. ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices.
pcre2/10.21/gnu-4.9.2 Adds pcre2 10.21 to your environment. PCRE (Perl-compatible regular expressions) is a C library implementing regular expression pattern-matching using the same semantics as Perl 5.
pgplot/5.2.2/intel-2017 Adds PGPlot 5.2.2 to your environment.
pgplot/5.2.2/intel-2018 Adds PGPlot 5.2.2 to your environment.
pillow-simd/6.0.0.post0/python-3.7.4 Adds Pillow-SIMD to your environment.
protobuf/3.5.1/gnu-4.9.2 adds Google Protocol Buffers for GCC 4.9.2 to your environment.
protobuf/12-2017/gnu-4.9.2 adds Google Protocol Buffers for GCC 4.9.2 to your environment.
pstreams/1.0.1/gnu-4.9.2 Adds pstreams 1.0.1 to your environment. PStreams is a C++ wrapper for process control and streaming using popen and pclose.
pygsl/2.1.1-python3.6/gnu-4.9.2 Adds pygsl 2.1.1 to your environment. PyGSL provides Python bindings for the GNU Scientific Library.
pyngl/1.4.0 Adds PyNGL to your environment.
pynio/1.4.1 Adds PyNIO to your environment.
quip/18c5440-threads/gnu-4.9.2 Adds QUIP to your environment. QUIP is required for CP2K.
quip/18c5440/gnu-4.9.2 Adds QUIP to your environment. QUIP is required for CP2K.
qutip/4.1.0/python-2.7.12 Adds qutip to your environment.
scalapack/2.0.2/gnu-4.9.2/openblas Adds ScaLAPACK 2.0.2 to your environment, built with GCC, OpenBLAS and OpenMPI. Static and shared libraries.
scalapack/2.0.2/gnu-4.9.2/openblas-0.3.2 Adds ScaLAPACK 2.0.2 to your environment, built with GCC, OpenBLAS and OpenMPI. Static and shared libraries.
scalapack/2.0.2/gnu-4.9.2/openblas-0.3.7 Adds ScaLAPACK 2.0.2 to your environment, built with GCC, OpenBLAS and OpenMPI. Static and shared libraries.
snappy/1.1.7 Adds Google snappy 1.1.7 to your environment.
sparskit2/2009.11.18/gnu-4.9.2 Adds sparskit2 2009.11.18 to your environment.
sparskit2/2009.11.18/intel-2015-update2 Adds sparskit2 2009.11.18 to your environment.
spectral/3.4.0/bindist Adds spectral 3.4.0 to your environment. Spectral is a set of tools for performing spectral analysis on traces produced by the BSC profiling toolkit.
spglib/1.7.4/gnu-4.9.2 Adds spglib 1.7.4 to your environment. Spglib is a library for finding and handling crystal symmetries written in C.
squid/1.9g/gnu-4.9.2 Adds squid 1.9g to your environment.
suitesparse/4.5.5/gnu-4.9.2-serial Adds suitesparse 4.5.5 to your environment. SuiteSparse is a suite of sparse matrix algorithms.
suitesparse/4.5.5/gnu-4.9.2-threaded Adds suitesparse 4.5.5 to your environment. SuiteSparse is a suite of sparse matrix algorithms.
suitesparse/4.5.5/intel-2017-update1 Adds suitesparse 4.5.5 to your environment. SuiteSparse is a suite of sparse matrix algorithms.
superlu-dist/5.1.0/intel-2015-update2 Adds superlu-dist 5.1.0 to your environment. SuperLU_DIST is the distributed-memory parallel version of SuperLU, a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations.
superlu/5.2.1/intel-2015-update2 Adds superlu 5.2.1 to your environment. SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations.
szip/2.1 Adds szip to your environment.
ucx/1.8.0/gnu-4.9.2 Adds ucx 1.8.0 to your environment. Unified Communication X (UCX) provides an optimized communication layer for Message Passing (MPI), PGAS/OpenSHMEM libraries and RPC/data-centric applications.
unixodbc/2.3.7 Unix ODBC driver
vtk/5.10.1/gnu-4.9.2 adds VTK 5.10.1 for GCC 4.9.2 to your environment.
vtk/6.2.0/gnu-4.9.2 adds VTK 6.2.0 for GCC 4.9.2 to your environment.
wavpack/5.1.0/gnu-4.9.2 WavPack is a completely open audio compression format providing lossless, high-quality lossy, and a unique hybrid compression mode.
webkitgtk/2.2.4-1 Adds the webkitgtk-1 with webkitgtk-devel library to your environment. 2.2.4-1 EL7 RPM binaries.
webkitgtk/2.4.9-1 Adds the webkitgtk with webkitgtk-devel library to your environment. 2.4.9-1 EL7 RPM binaries.
zeromq/4.1.4/gnu-4.9.2 Adds zeromq 4.1.4 to your environment. ZeroMQ is a distributed messaging library that supports many message-passing patterns and methods.

Development Tools§

This section is for modules for programs that are used in software development, profiling, or troubleshooting.

It also contains language interpreters, like Python, Ruby, and Java.

Module Description
autoconf/2.69 Adds GNU Autoconf Version 2.69 to your environment.
autogen/5.18.12/gnu-4.9.2 AutoGen is a tool designed to simplify the creation and maintenance of programs that contain large amounts of repetitious text.
automake/1.16.1 Adds GNU Automake Version 1.16.1 to your environment.
bazel/0.7.0 Adds bazek to your environment.
bazel/0.14.1/gnu-4.9.2 Adds bazek to your environment.
bazel/0.21.0/gnu-4.9.2 Adds bazek to your environment.
bazel/0.24.0/gnu-4.9.2 Adds bazek to your environment.
bazel/0.24.1/gnu-4.9.2 Adds bazek to your environment.
bazel/0.26.1/gnu-4.9.2 Adds bazek to your environment.
bazel/0.27.1/gnu-4.9.2 Adds bazek to your environment.
binutils/2.29.1/gnu-4.9.2 Adds binutils 2.29.1 to your environment. The GNU binutils are a collection of tools for working with binary files and assembling and disassembling machine instructions.
bison/3.0.4/gnu-4.9.2 Adds Bison 3.0.4 to your environment. Bison is a general-purpose parser generator.
chicken/4.13.0 adds Chicken 4.13.0 to your environment variables
clojure/1.10.0.411 This is a module with no description string.
cmake/3.2.1 adds Cmake 3.2.1 compilers to your environment variables
cmake/3.7.2 adds Cmake 3.7.2 compilers to your environment variables
cmake/3.13.3 adds Cmake 3.13.3 compilers to your environment variables
cuda/7.5.18/gnu-4.9.2 Adds cuda 7.5.18 to your environment. This is for compiling CUDA code to run on NVIDIA GPUs.
cuda/8.0.61-patch2/gnu-4.9.2 Adds cuda 8.0.61 patch2 to your environment. This is for compiling CUDA code to run on NVIDIA GPUs.
cuda/9.0.176-patch4/gnu-4.9.2 Adds cuda 9.0.176 patch4 to your environment. This is for compiling CUDA code to run on NVIDIA GPUs.
cuda/10.0.130/gnu-4.9.2 Adds cuda 10.0.130 to your environment. This is for compiling CUDA code to run on NVIDIA GPUs.
cuda/10.1.243/gnu-4.9.2 Adds cuda 10.1.243 to your environment. This is for compiling CUDA code to run on NVIDIA GPUs.
cudnn/5.1/cuda-7.5 Adds cuDNN to your environment.
cudnn/5.1/cuda-8.0 Adds cuDNN to your environment.
cudnn/6.0/cuda-7.5 Adds cuDNN to your environment.
cudnn/6.0/cuda-8.0 Adds cuDNN to your environment.
cudnn/7.0.4/cuda-8.0 Adds cuDNN to your environment.
cudnn/7.1.4/cuda-9.0 Adds cuDNN to your environment.
cudnn/7.4.2.24/cuda-9.0 Adds cuDNN to your environment.
cudnn/7.4.2.24/cuda-10.0 Adds cuDNN to your environment.
cudnn/7.5.0.56/cuda-10.0 Adds cuDNN to your environment.
cudnn/7.5.0.56/cuda-10.1 Adds cuDNN to your environment.
cudnn/7.6.5.32/cuda-10.0 Adds cuDNN to your environment.
cudnn/7.6.5.32/cuda-10.1 Adds cuDNN to your environment.
ddt/6.0.4 This module adds DDT 6.0.4 with MIC support to your environment.
depot_tools/788d9e0d adds depot_tools to your environment variables
depot_tools/c03a9cf adds depot_tools to your environment variables
dimemas/5.3.3/bindist Adds dimemas 5.3.3 to your environment. Dimemas is an abstracted network simulator for message-passing programs.
doxygen/1.8.14 This is a module with no description string.
emacs/24.5 Adds Emacs 24.5 to your environment. An extensible text editor.
emacs/26.3 Adds Emacs 26.3 to your environment. An extensible text editor.
extrae/3.5.2/intel-2017 Adds extrae 3.5.2 to your environment. Extrae is an instrumentation framework to generate execution traces of the most used parallel runtimes.
f2c/2013-09-26/gnu-4.9.2 Adds f2c 2013-09-26 to your environment. f2c is a source-to-source translator from Fortran 77 to C. It is not standards-compliant and is not recommended for use under any circumstances.
flex/2.5.39 adds Flex 2.4.39 to your environment variables
git/2.3.5 adds Git 2.3.5 to your environment variables
git/2.10.2 adds Git 2.10.2 to your environment variables
git/2.19.1 adds Git 2.19.1 to your environment variables
gperf/3.0.4/gnu-4.9.2 Adds gperf 3.0.4 to your environment. GNU gperf is a perfect hash function generator.
guile/2.0.11/gnu-4.9.2 Adds guile 2.0.11 to your environment.
haskellplatform/2014.2.0.0 adds Haskell Platform to your environment variables
htop/1.0.3/gnu-4.9.2 Adds htop 1.0.3 to your environment.
java/1.8.0_45 adds Oracle JDK 1.8.0_45 compilers to your environment variables
java/1.8.0_92 adds Oracle JDK 1.8.0_92 compilers to your environment variables
java/openjdk-8/8u212/hotspot adds Oracle JDK 8 compilers to your environment variables
java/openjdk-8/8u212/openj9 adds Oracle JDK 8 compilers to your environment variables
java/openjdk-11/11.0.1 adds Oracle JDK 11.0.1 compilers to your environment variables
java/openjdk-11/11.0.3u7/hotspot adds Oracle JDK 11.0.3 compilers to your environment variables
java/openjdk-11/11.0.3u7/openj9 adds Oracle JDK 11.0.3 compilers to your environment variables
julia/0.3.10 adds Julia 0.3.10 to your environment variables
julia/0.4.0 adds Julia 0.4.0 to your environment variables
julia/0.4.7 adds Julia 0.4.7 to your environment variables
julia/0.5.0 adds Julia 0.5.0 to your environment variables
julia/0.6.0 adds Julia 0.6.0 to your environment variables
julia/0.7.0 adds Julia 0.7.0 to your environment variables
julia/1.0.0 adds Julia 1.0.0 to your environment variables
julia/1.1.0 adds Julia 1.1.0 to your environment variables
julia/1.2.0 adds Julia 1.2.0 to your environment variables
julia/1.3.1 adds Julia 1.3.1 to your environment variables
libtool/2.4.6 Adds libtool 2.4.6 to your environment. GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
ltrace/0.7.3/gnu-4.9.2 Adds ltrace 0.7.3 to your environment.
lua/5.3.1 This module adds the Lua 5.3.1 package to your environment. Lua is a powerful, fast, lightweight, embeddable scripting language.
mc/4.8.14 This module adds Midnight Commander 4.8.14 to your environment.
mono/3.12.1 adds Mono 3.12.1 compilers to your environment variables
mono/5.20.1.27/gnu-4.9.2 This is a module with no description string.
nano/2.4.2 Adds nano 2.4.2 to your environment. A simple text editor.
nano/4.9 The nano text editor.
nasm/2.13.01 The Netwide Assembler, NASM, is an 80x86 and x86-64 assembler.
ncl/6.0.0 adds NCL 6.0.0 to your environment variables
ncl/6.3.0 adds NCL 6.3.0 to your environment variables
nedit/5.6-aug15 Adds the NEdit GUI text editor to your environment.
netlogo/6.1.0 adds NetLogo tooklit compilers to your environment variables
paraver/4.6.4.rc1/bindist Adds paraver 4.6.4.rc1 to your environment. Paraver is a trace visualizer for post-mortem trace analysis.
perl/5.16.0 This module adds adds Perl 5.16.0 to your environment.
perl/5.22.0 This module adds adds Perl 5.22.0 to your environment.
perlbrew/0.73 This module adds the Perlbrew 0.73 package to your environment. Use Perlbrew to manage your own Perls and Perl modules
pigz/2.4 pigz is a fully functional replacement for gzip that exploits multiple processors and multiple cores when compressing data.
pycuda/2017.1/python2 Adds Python2 PyCuda to your environment. MPI for Python.
pycuda/2017.1/python3 Adds Python3 PyCuda to your environment. MPI for Python.
pypy3/6.0.0/gnu-4.9.2 Pypy is a JIT-ing interpreter for the Python language. This is the version intended to be compatible with CPython 3.5.
python/2.7.9 adds Python 2.7.9 with pip and virtualenv to your environment variables
python/2.7.12 adds Python 2.7.12 with pip and virtualenv to your environment variables
python/3.4.3 adds Python 3.4.3 with pip and virtualenv to your environment variables
python/3.5.2 adds Python 3.5.2 with pip and virtualenv to your environment variables
python/3.6.1/gnu-4.9.2 Adds Python 3.6.1 with pip and virtualenv to your environment variables.
python/3.6.3 Adds Python 3.6.3 with pip and virtualenv to your environment variables.
python/3.7.0 Adds Python 3.7.0 with pip and virtualenv to your environment variables.
python/3.7.2 Adds Python 3.7.2 with pip and virtualenv to your environment variables.
python/3.7.4 Adds Python 3.7.4 with pip and virtualenv to your environment variables.
python/3.8.0 Adds Python 3.8.0 with pip and virtualenv to your environment variables.
python/idp3/2019/3.6.8 Adds Intel Distribution for Python to your environment variables.
python/miniconda3/4.5.11 Adds Miniconda 4.5.11 to your environment variables.
qt/4.8.6/gnu-4.9.2 Adds Qt 4.8.6 to your environment. Qt is a cross-platform development tool.
qt/5.4.2/gnu-4.9.2 Adds Qt 5.4.2 to your environment. Qt is a cross-platform development tool.
qt/5.12.1/gnu-4.9.2 Adds Qt 5.12.1 to your environment. Qt is a cross-platform development tool.
qwt/6.1.4/gnu-4.9.2 Adds Qwt 6.1.4 to your environment.
racket/6.8 Adds Racket 6.8 to your enviroment.
rappture/20130903 Adds the Rappture toolkit to your environment.
ruby/2.2.2 Ruby 2.2.2 with RubyGems 2.4.8 and libffi 3.2.1
ruse/1.0.1 A command-line utility to periodically measure the memory use of a process and its subprocesses.
sbcl/1.3.19 Adds Steelbank Common LISP 1.3.19 to your environment.
scons/2.3.4 adds scons 2.3.4 to your environment variables
strace/4.12 Adds strace 4.12 to your environment. Trace system calls and signals.
subversion/1.8.13 adds Subversion 1.8.13 to your environment variables
swig/3.0.5/gnu-4.9.2 This module adds the SWIG 3.0.5 package to your environment. SWIG is an interface compiler that connects programs written in C and C++ with scripting languages such as Perl, Python, Ruby, and Tcl.
swig/3.0.7/gnu-4.9.2 This module adds the SWIG 3.0.7 package to your environment. SWIG is an interface compiler that connects programs written in C and C++ with scripting languages such as Perl, Python, Ruby, and Tcl.
tcl/8.6.8 This is a modulefile for Tcl/Tk 8.6.8
v8/3.15 adds v8 to your environment variables
v8/5.6 adds v8 to your environment variables
valgrind/3.11.0/gnu-4.9.2 Adds valgrind 3.11.0 to your environment. Valgrind is a framework for building dynamic analysis tools. It includes the memgrind and cachegrind tools.
xbae/4.60.4 Adds the Xbae Matrix Widget to your environment.
xorg-utils/X11R7.7 Adds xorg-utils from X11R7.7 to your environment. Includes util-macros-1.17, makedepend-1.0.5 libXdmcp-1.1.1 and libXScrnSaver-1.2.2 and imake-1.0.7.

Core Modules§

These modules refer to groups of system tools, rather than applications. They're intended to help you use the system, and some are loaded by default.

Module Description
gerun adds gerun wrapper to your environment variables
lm-utils/1.0 adds utilities to check license manager status to your environment.
mrxvt/0.5.4 Adds Mrxvt a multi-tabbed xterm replacement to your environment.
ops-tools/1.0.0 Tools for Ops work
ops-tools/1.1.0 Tools for Ops work
ops-tools/2.0.0 Tools for Ops work
rcps-core/1.0.0 adds a core set of applications and libraries to your environment.
rlwrap/0.43 adds rlwrap 0.43 to your environment variables
screen/4.2.1 adds Screen 4.2.1 to your environment variables
userscripts/1.0.0 Adds userscripts dir to your path. Provides jobhist among other utilities.
userscripts/1.1.0 Adds userscripts dir to your path. Provides jobhist among other utilities.
userscripts/1.2.0 Adds userscripts dir to your path. Provides jobhist among other utilities.
userscripts/1.3.0 Adds userscripts dir to your path. Provides jobhist among other utilities.
userscripts/1.4.0 Adds userscripts dir to your path. Provides jobhist among other utilities.

Beta Modules§

This section is for modules we're still trying out. They may or may not work with applications from other sections.

Module Description
compilers/gnu/7.3.0 The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages (libstdc++,...).
compilers/gnu/8.3.0 The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages (libstdc++,...).
compilers/gnu/9.2.0 The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages (libstdc++,...).
cuda/10.1.243/gnu-7.3.0 Adds cuda 10.1.243 to your environment. This is for compiling CUDA code to run on NVIDIA GPUs.
fftw/3.3.8/gnu-9.2.0 Adds FFTW 3.3.8 for GCC 9.2.0 compilers to your environment variables. Includes single and double precision, plus long-double and quad. Includes OpenMP and POSIX threads libraries.
gcc-libs/7.3.0 Base module for gcc 7.3.0 -- does not set the standard compiler environment variables. The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages (libstdc++,...).
gcc-libs/8.3.0 Base module for gcc 8.3.0 -- does not set the standard compiler environment variables. The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages (libstdc++,...).
gcc-libs/9.2.0 Base module for gcc 9.2.0 -- does not set the standard compiler environment variables. The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Ada, and Go, as well as libraries for these languages (libstdc++,...).
gdal/3.0.4/gnu-9.2.0 adds GDAL 3.0.4 with PROJ.4 7.0.0 to your environment variables.
geos/3.8.1/gnu-9.2.0 Adds geos 3.8.1 to your environment. GEOS (Geometry Engine, Open Source) is a library for performing various spatial operations, especially for boolean operations on GIS data. Note this version does not include the SWIG, Python, Ruby, or PHP bindings.
gmt/6.0.0/gnu-9.2.0 adds GMT 6.0.0 to your environment variables
gromacs/2020.1/cuda-10.1 Adds gromacs 2020.1 to your environment. GROMACS is a package for performing molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
gromacs/2020.1/intel-2020 Adds gromacs 2020.1 to your environment. GROMACS is a package for performing molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
gsl/2.6/gnu-9.2.0 adds GSL 2.6 for GCC 9.2.0 to your environment.
hdf/5-1.10.5/gnu-9.2.0 Adds hdf 5-1.10.5 to your environment. Serial version built with GNU.
libpng/1.6.37/gnu-9.2.0 Adds libpng 1.6.37 to your environment.
matlab/full/r2018a/9.4-prefdir-fix Adds Matlab R2018a to your environment.
med/4.0.0/gnu-9.2.0 Adds med 4.0.0 to your environment. Allows reading and writing of MED format files.
mpi/openmpi/3.1.4/gnu-7.3.0 Adds openmpi 3.1.4 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mpi/openmpi/3.1.5/gnu-9.2.0 Adds openmpi 3.1.5 to your environment. The Open MPI Project is an open source Message Passing Interface implementation.
mumps/5.2.1/gnu-9.2.0 Adds mumps 5.2.1 to your environment. Sequential (threaded) version built with GNU, OpenBLAS and METIS.
namd/2.13/intel-2018-update3/testing Adds NAMD 2.13 to your environment
namd/2.13/plumed/intel-2018-update3/testing Adds NAMD 2.13 to your environment
netcdf/4.7.4/gnu-9.2.0 adds NetCDF 4.7.4 for GCC 9.2.0 to your environment.
openblas/0.3.7-native-threads/gnu-9.2.0 OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
openblas/0.3.7-openmp/gnu-9.2.0 OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
openblas/0.3.7-serial/gnu-9.2.0 OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
pcre2/10.35/gnu-9.2.0 Adds pcre2 10.35 to your environment. PCRE (Perl-compatible regular expressions) is a C library implementing regular expression pattern-matching using the same semantics as Perl 5.
proj.4/7.0.0/gnu-9.2.0 Adds the PROJ.4 Cartographic Projections library to your environment.
r/3.6.3-openblas/gnu-9.2.0 Adds R 3.6.3 and Bioconductor 3.10 to your environment.
r/4.0.2-openblas/gnu-9.2.0 Adds R 4.0.2 and Bioconductor 3.11 to your environment.
r/r-3.6.3_bc-3.10 adds UCL recommended set of R packages to your environment variables
stata/16 Adds Stata/MP 16 to your environment.
udunits/2.2.26/gnu-9.2.0 adds the UDUNITS-2 package to your environment.

Workaround Modules§

Sometimes we'll find a problem that can't be fixed properly, but can be worked-around by doing something that can be loaded as a module. That kind of module goes in this section.

Module Description
bazel-compiler-helpers/intel-2018 Adds bazel compiler wrappers to your environment.
getcwd-autoretry This module uses LD_PRELOAD to shadow the getcwd function with a version that retries on failure, and is intended to workaround a bug in the Lustre filesystem.